Prof. Dr. Nadine Schwierz

Professor
Computational Biology
Phone: +49 (0)821 598 3714
Email:
Room: 406 (S)
Opening hours: by appointment (via E-Mail)
Address: Universitätsstraße 1 (Physik Süd), 86159 Augsburg

Teaching

(applied filters: semester: current | institute: Computational Biology | lecturers: Nadine Schwierz-Neumann | course types: all)
name home institute semester type language
Übung zu Theoretische Physik I Computational Biology winter semester 2023/24 Übung
Theoretische Physik I (Höhere Mechanik, Quantenmechanik Teil 1) Computational Biology winter semester 2023/24 Vorlesung deutsch

Publications

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2013 | 2012 | 2011 | 2010

2024

Peter Benedikt Pfeiffer, Marijana Ugrina, Nadine Schwierz, Christina J. Sigurdson, Matthias Schmidt und Marcus Fändrich
Cryo-EM analysis of the effect of seeding with brain-derived Aβ amyloid fibrils

PDF | BibTeX | RIS | DOI

Giada Andreotti, Julian Baur, Marijana Ugrina, Peter Benedikt Pfeiffer, Max Hartmann, Sebastian Wiese, Hiroki Miyahara, Keiichi Higuchi, Nadine Schwierz, Matthias Schmidt und Marcus Fändrich
Insights into the structural basis of amyloid resistance provided by cryo-EM structures of AApoAII amyloid fibrils

BibTeX | RIS | DOI

2023

Mohd Ibrahim, Christiane Wenzel, Max Lallemang, Bizan N. Balzer und Nadine Schwierz
Adsorbing DNA to mica by cations: influence of valency and ion type

BibTeX | RIS | DOI

Miriam Grava, Mohd Ibrahim, Akhil Sudarsan, Julio Pusterla, Julian Philipp, Joachim O. Rädler, Nadine Schwierz und Emanuel Schneck
Combining molecular dynamics simulations and x-ray scattering techniques for the accurate treatment of protonation degree and packing of ionizable lipids in monolayers

PDF | BibTeX | RIS | DOI

Kartikay Sharma, Sambhasan Banerjee, Dilan Savran, Cedric Rajes, Sebastian Wiese, Amandeep Girdhar, Nadine Schwierz, Christopher Lee, James Shorter, Matthias Schmidt, Lin Guo und Marcus Fändrich
Cryo-EM structure of the full-length hnRNPA1 amyloid fibril

BibTeX | RIS | DOI

Marijana Ugrina, Ines Burkhart, Diana Müller, Harald Schwalbe und Nadine Schwierz
RNA G-quadruplex folding is a multi-pathway process driven by conformational entropy

BibTeX | RIS | DOI

Gregory R. Bowman, Stephen J. Cox, Christoph Dellago, Kateri H. DuBay, Joel D. Eaves, Daniel A. Fletcher, Layne B. Frechette, Michael Grünwald, Katherine Klymko, JiYeon Ku, Ahmad K. Omar, Eran Rabani, David R. Reichman, Julia R. Rogers, Andreana M. Rosnik, Grant M. Rotskoff, Anna R. Schneider, Nadine Schwierz, David A. Sivak, Suriyanarayanan Vaikuntanathan, Stephen Whitelam und Asaph Widmer-Cooper
Remembering the work of Phillip L. Geissler: a coda to his scientific trajectory

PDF | BibTeX | RIS | DOI

Mohd Ibrahim, Jennifer Gilbert, Marcel Heinz, Tommy Nylander und Nadine Schwierz
Structural insights on ionizable Dlin-MC3-DMA lipids in DOPC layers by combining accurate atomistic force fields, molecular dynamics simulations and neutron reflectivity

PDF | BibTeX | RIS | DOI

2022

J. Neumann und Nadine Schwierz
Artificial intelligence resolves kinetic pathways of magnesium binding to RNA

PDF | BibTeX | RIS | DOI

Thomas Heerde, Matthies Rennegarbe, Alexander Biedermann, Dilan Savran, Peter B. Pfeiffer, Manuel Hitzenberger, Julian Baur, Ioana Puscalau-Girtu, Martin Zacharias, Nadine Schwierz, Christian Haupt, Matthias Schmidt und Marcus Fändrich
Cryo-EM demonstrates the in vitro proliferation of an ex vivo amyloid fibril morphology by seeding

PDF | BibTeX | RIS | DOI

Kara K. Grotz und Nadine Schwierz
Magnesium force fields for OPC water with accurate solvation, ion-binding, and water-exchange properties: successful transfer from SPC/E

PDF | BibTeX | RIS | DOI

Sergio Cruz-León und Nadine Schwierz
RNA captures more cations than DNA: insights from molecular dynamics simulations

PDF | BibTeX | RIS | DOI

Arpita Sundaria, Falk Liberta, Dilan Savran, Riddhiman Sarkar, Natascha Rodina, Carsten Peters, Nadine Schwierz, Christian Haupt, Matthias Schmidt und Bernd Reif
SAA fibrils involved in AA amyloidosis are similar in bulk and by single particle reconstitution: a MAS solid-state NMR study

PDF | BibTeX | RIS | DOI

Sergio Cruz-León, Willem Vanderlinden, Peter Müller, Tobias Forster, Georgina Staudt, Yi-Yun Lin, Jan Lipfert und Nadine Schwierz
Twisting DNA by salt

PDF | BibTeX | RIS | DOI

2021

Sergio Cruz-León, Kara K. Grotz und Nadine Schwierz
Extended magnesium and calcium force field parameters for accurate ion–nucleic acid interactions in biomolecular simulations

PDF | BibTeX | RIS | DOI

Sebastian Falkner und Nadine Schwierz
Kinetic pathways of water exchange in the first hydration shell of magnesium: influence of water model and ionic force field

PDF | BibTeX | RIS | DOI

Kara K. Grotz, Sergio Cruz-León und Nadine Schwierz
Optimized magnesium force field parameters for biomolecular simulations with accurate solvation, ion-binding, and water-exchange properties

PDF | BibTeX | RIS | DOI

Kara K. Grotz und Nadine Schwierz
Optimized magnesium force field parameters for biomolecular simulations with accurate solvation, ion-binding, and water-exchange properties in SPC/E, TIP3P-fb, TIP4P/2005, TIP4P-Ew, and TIP4P-D

PDF | BibTeX | RIS | DOI

2020

Sergio Cruz-León und Nadine Schwierz
Hofmeister series for metal-cation–RNA interactions: the interplay of binding affinity and exchange kinetics

PDF | BibTeX | RIS | DOI

Nadine Schwierz
Kinetic pathways of water exchange in the first hydration shell of magnesium

PDF | BibTeX | RIS | DOI

2019

Simone R. van Lin, Kara K. Grotz, Igor Siretanu, Nadine Schwierz und Frieder Mugele
Ion-specific and pH-dependent hydration of mica–electrolyte interfaces

PDF | BibTeX | RIS | DOI

2018

Sergio Cruz-León, Alvaro Vázquez-Mayagoitia, Simone Melchionna, Nadine Schwierz und Maria Fyta
Coarse-grained double-stranded RNA model from quantum-mechanical calculations

BibTeX | RIS | DOI

Shavkat Mamatkulov und Nadine Schwierz
Force fields for monovalent and divalent metal cations in TIP3P water based on thermodynamic and kinetic properties

PDF | BibTeX | RIS | DOI

2017

Nadine Schwierz, Christina V. Frost, Phillip L. Geissler und Martin Zacharias
From Aβ filament to fibril: molecular mechanism of surface-activated secondary nucleation from all-atom MD simulations

BibTeX | RIS | DOI

2016

Nadine Schwierz, Christina V. Frost, Phillip L. Geissler und Martin Zacharias
Dynamics of seeded Aβ40-fibril growth from atomistic molecular dynamics simulations: kinetic trapping and reduced water mobility in the locking step

PDF | BibTeX | RIS | DOI

Nadine Schwierz, Royce K. Lam, Zach Gamlieli, Jeremiah J. Tills, Alvin Leung, Phillip L. Geissler und Richard J. Saykally
Hydrogen and electric power generation from liquid microjets: design principles for optimizing conversion efficiency

BibTeX | RIS | DOI

Sukanya Sasmal, Nadine Schwierz und Teresa Head-Gordon
Mechanism of nucleation and growth of Aβ40 fibrils from all-atom and coarse-grained simulations

BibTeX | RIS | DOI

Nadine Schwierz, Stefanie Krysiak, Thorsten Hugel und Martin Zacharias
Mechanism of reversible peptide–bilayer attachment: combined simulation and experimental single-molecule study

BibTeX | RIS | DOI

Nadine Schwierz, Dominik Horinek, Uri Sivan und Roland R. Netz
Reversed Hofmeister series - the rule rather than the exception

PDF | BibTeX | RIS | DOI

2015

Nadine Schwierz, Dominik Horinek und Roland R. Netz
Specific ion binding to carboxylic surface groups and the pH dependence of the Hofmeister series

BibTeX | RIS | DOI

2013

Nadine Schwierz, Dominik Horinek und Roland R. Netz
Anionic and cationic Hofmeister effects on hydrophobic and hydrophilic surfaces

BibTeX | RIS | DOI

S. Deutschländer, K. Franzrahe, B. Heinze, P. Henseler, P. Keim, Nadine Schwierz, U. Siems, P. Virnau, D. Wilms, K. Binder, G. Maret und P. Nielaba
Effects of boundaries on structure formation in low-dimensional colloid model systems near the liquid-solid-transition in equilibrium and in external fields and under shear

PDF | BibTeX | RIS | DOI

2012

Nadine Schwierz und Roland R. Netz
Effective interaction between two ion-adsorbing plates: Hofmeister series and salting-in/salting-out phase diagrams from a global mean-field analysis

BibTeX | RIS | DOI

D. Wilms, S. Deutschländer, U. Siems, K. Franzrahe, P. Henseler, P. Keim, Nadine Schwierz, P. Virnau, K. Binder, G. Maret und P. Nielaba
Effects of confinement and external fields on structure and transport in colloidal dispersions in reduced dimensionality

PDF | BibTeX | RIS | DOI

U. Siems, C. Kreuter, A. Erbe, Nadine Schwierz, S. Sengupta, P. Leiderer und P. Nielaba
Non-monotonic crossover from single-file to regular diffusion in micro-channels

PDF | BibTeX | RIS | DOI

Nadine Schwierz, Dominik Horinek, Susanne Liese, Tobias Pirzer, Bizan N. Balzer, Thorsten Hugel und Roland R. Netz
On the relationship between peptide adsorption resistance and surface contact angle: a combined experimental and simulation single-molecule study

PDF | BibTeX | RIS | DOI

Sandra Kienle, Susanne Liese, Nadine Schwierz, Roland R. Netz und Thorsten Hugel
The effect of temperature on single-polypeptide adsorption

PDF | BibTeX | RIS | DOI

2011

Eduardo R. A. Lima, Mathias Boström, Nadine Schwierz, Bo E. Sernelius und Frederico W. Tavares
Attractive double-layer forces between neutral hydrophobic and neutral hydrophilic surfaces

PDF | BibTeX | RIS | DOI

2010

Nadine Schwierz und Peter Nielaba
Colloidal systems in three-dimensional microchannels: lattice control via channel width and external force

PDF | BibTeX | RIS | DOI

J. Dzubiella, M. Fyta, D. Horinek, I. Kalcher, R. R. Netz und Nadine Schwierz
Ion-specificity: from solvation thermodynamics to molecular simulations and back

BibTeX | RIS | DOI

Nadine Schwierz, Dominik Horinek und Roland R. Netz
Reversed anionic Hofmeister series: the interplay of surface charge and surface polarity

BibTeX | RIS | DOI

Search